If your car sits crooked on one side or one corner all the time and there are no obvious reasons (like a blown bag, leaky valve, trouble codes, etc), one or more of the ride height sensors may simply be out of whack and you may need to recalibrate ride height. Or, if the car appears to be riding a little lower than it used to in normal height, you may need to recalibrate. If you replace a faulty height sensor, or a control arm, or the EAS module itself, you definitely must recalibrate the whole EAS system as the values will most likely need to be different with the new hardware installed. Basically, when you calibrate you permanently change the original factory values with new ones based on actual measurements you take at each wheel.
It's not something you do every day, you may never need to do it actually. But you can perform a full blown calibration with IIDTool if you have to - there is a specific chapter with fairly complicated worksheet and sample charts in the IIDTool manual that helps figuring out the ride height adjustment / calibration process. It's the same exacting procedure a dealer would follow: They don't just add or subtract millimeters. They put the car in tight tolerance mode, measure the distance between wheel center and top of wheel arch at each wheel (they actually use a special tool for that, at home we are stuck with a more pedestrian tape measure...), compare the measurements with their factory specs, and make any necessary adjustments by modifying the factory values with new calculated ones in the EAS module, which unfortunately vary not only for each individual car, but very often for each corner of the same car. It's a fairly involving procedure.
Anyway, if you try to perform all that with your IIDTool while the Llams module is connected, you won't be able to even start the routine (neither will the dealer or an indy shop, which is why you should always disconnect Lllams before having work done on your suspensions.) The calibration values you need to retrieve from the EAS module will jump all over the place while Llams is hooked up, you can't get a steady reading. You need to unplug it and use the null plug Llams supplies to completely remove the module from the equation and get the current stored values you need. Then, you can calibrate.